Skip to content
Using Microbiology to Discover the Secrets of Life

Using Microbiology to Discover the Secrets of Life

By the end of this section, you will be able to:

  • Describe the discovery of nucleic acid and nucleotides
  • Explain the historical experiments that led to the characterization of DNA
  • Describe how microbiology and microorganisms have been used to discover the biochemistry of genes
  • Explain how scientists established the link between DNA and heredity

Clinical Focus. Part 1

Alex is a 22-year-old college student who vacationed in Puerta Vallarta, Mexico, for spring break. Unfortunately, two days after flying home to Ohio, he began to experience abdominal cramping and extensive watery diarrhea. Because of his discomfort, he sought medical attention at a large Cincinnati hospital nearby.

  • What types of infections or other conditions may be responsible?

The case continues in Structure and Function of DNA.

Through the early 20th century, DNA was not yet recognized as the genetic material responsible for heredity, the passage of traits from one generation to the next. In fact, much of the research was dismissed until the mid-20th century. The scientific community believed, incorrectly, that the process of inheritance involved a blending of parental traits that produced an intermediate physical appearance in offspring; this hypothetical process appeared to be correct because of what we know now as continuous variation, which results from the action of many genes to determine a particular characteristic, like human height. Offspring appear to be a “blend” of their parents’ traits when we look at characteristics that exhibit continuous variation. The blending theory of inheritance asserted that the original parental traits were lost or absorbed by the blending in the offspring, but we now know that this is not the case.

Two separate lines of research, begun in the mid to late 1800s, ultimately led to the discovery and characterization of DNA and the foundations of genetics, the science of heredity. These lines of research began to converge in the 1920s, and research using microbial systems ultimately resulted in significant contributions to elucidating the molecular basis of genetics.

Discovery and Characterization of DNA

Modern understanding of DNA has evolved from the discovery of nucleic acid to the development of the double-helix model. In the 1860s, Friedrich Miescher (1844–1895), a physician by profession, was the first person to isolate phosphorus-rich chemicals from leukocytes (white blood cells) from the pus on used bandages from a local surgical clinic. He named these chemicals (which would eventually be known as RNA and DNA) “nuclein” because they were isolated from the nuclei of the cells. His student Richard Altmann (1852–1900) subsequently termed it “nucleic acid” 20 years later when he discovered the acidic nature of nuclein. In the last two decades of the 19th century, German biochemist Albrecht Kossel (1853–1927) isolated and characterized the five different nucleotide bases composing nucleic acid. These are adenine, guanine, cytosine, thymine (in DNA), and uracil (in RNA). Kossel received the Nobel Prize in Physiology or Medicine in 1910 for his work on nucleic acids and for his considerable work on proteins, including the discovery of histidine.

Foundations of Genetics

Despite the discovery of DNA in the late 1800s, scientists did not make the association with heredity for many more decades. To make this connection, scientists, including a number of microbiologists, performed many experiments on plants, animals, and bacteria.

Mendel’s Pea Plants

While Miescher was isolating and discovering DNA in the 1860s, Austrian monk and botanist Johann Gregor Mendel (1822–1884) was experimenting with garden peas, demonstrating and documenting basic patterns of inheritance, now known as Mendel’s laws.

In 1856, Mendel began his decade-long research into inheritance patterns. He used the diploid garden pea, Pisum sativum, as his primary model system because it naturally self-fertilizes and is highly inbred, producing “true-breeding” pea plant lines—plants that always produce offspring that look like the parent. By experimenting with true-breeding pea plants, Mendel avoided the appearance of unexpected traits in offspring that might occur if he used plants that were not true-breeding. Mendel performed hybridizations, which involve mating two true-breeding individuals (P generation) that have different traits, and examined the characteristics of their offspring (first filial generation, F₁) as well as the offspring of self-fertilization of the F₁ generation (second filial generation, F₂), shown below.

Diagram of three generations of Mendel's pea cross: the P generation shows one plant with violet flowers and one with white flowers; an arrow labeled hybridization of true-breeding plants leads to the F₁ generation, a single plant labeled all hybrid progeny have violet flowers; a second arrow labeled self-fertilization of hybrid plants leads to the F₂ generation, shown as two plants labeled 705 violet flowers and 224 white flowers.
In one of his experiments on inheritance patterns, Mendel crossed plants that were true- breeding for violet flower color with plants true-breeding for white flower color (the P generation). The resulting hybrids in the F₁ generation all had violet flowers. In the F₂ generation, approximately three-quarters of the plants had violet flowers, and one-quarter had white flowers.
Extended description

The diagram reads left to right in three labeled generations. The P generation shows two pea plants side by side, one bearing violet flowers and one bearing white flowers. An arrow labeled ‘hybridization of true-breeding plants’ points to the F₁ generation, a single plant labeled ‘all hybrid progeny have violet flowers.’ A second arrow labeled ‘self-fertilization of hybrid plants’ points to the F₂ generation, shown as two plants labeled ‘705 violet flowers’ and ‘224 white flowers.’

In 1865, Mendel presented the results of his experiments with nearly 30,000 pea plants to the local natural history society. He demonstrated that traits are transmitted faithfully from parents to offspring independently of other traits. In 1866, he published his work, “Experiments in Plant Hybridization,” in the Proceedings of the Natural History Society of Brünn (J.G. Mendel, “Versuche über Pflanzenhybriden,” Verhandlungen des naturforschenden Vereines in Brünn, Bd. Abhandlungen 4 (1865):3–7). Mendel’s work went virtually unnoticed by the scientific community, which believed, incorrectly, in the theory of blending of traits in continuous variation.

He was not recognized for his extraordinary scientific contributions during his lifetime. In fact, it was not until 1900 that his work was rediscovered, reproduced, and revitalized by scientists on the brink of discovering the chromosomal basis of heredity.

The Chromosomal Theory of Inheritance

Mendel carried out his experiments long before chromosomes were visualized under a microscope. However, with the improvement of microscopic techniques during the late 1800s, cell biologists could stain and visualize subcellular structures with dyes and observe their actions during meiosis. They were able to observe chromosomes replicating, condensing from an amorphous nuclear mass into distinct X-shaped bodies and migrating to separate cellular poles. The speculation that chromosomes might be the key to understanding heredity led several scientists to examine Mendel’s publications and re-evaluate his model in terms of the behavior of chromosomes during mitosis and meiosis.

In 1902, Theodor Boveri (1862–1915) observed that in sea urchins, nuclear components (chromosomes) determined proper embryonic development. That same year, Walter Sutton (1877–1916) observed the separation of chromosomes into daughter cells during meiosis. Together, these observations led to the development of the Chromosomal Theory of Inheritance, which identified chromosomes as the genetic material responsible for Mendelian inheritance.

Despite compelling correlations between the behavior of chromosomes during meiosis and Mendel’s observations, the Chromosomal Theory of Inheritance was proposed long before there was any direct evidence that traits were carried on chromosomes. Thomas Hunt Morgan (1866–1945) and his colleagues spent several years carrying out crosses with the fruit fly, Drosophila melanogaster. They performed meticulous microscopic observations of fly chromosomes and correlated these observations with resulting fly characteristics. Their work provided the first experimental evidence to support the Chromosomal Theory of Inheritance in the early 1900s. In 1915, Morgan and his “Fly Room” colleagues published The Mechanism of Mendelian Heredity, which identified chromosomes as the cellular structures responsible for heredity. For his many significant contributions to genetics, Morgan received the Nobel Prize in Physiology or Medicine in 1933.

In the late 1920s, Barbara McClintock (1902–1992) developed chromosomal staining techniques to visualize and differentiate between the different chromosomes of maize (corn). In the 1940s and 1950s, she identified a breakage event on chromosome 9, which she named the dissociation locus (Ds). Ds could change position within the chromosome. She also identified an activator locus (Ac). Ds chromosome breakage could be activated by an Ac element (transposase enzyme). At first, McClintock’s finding of these “jumping genes,” which we now call transposons, was not accepted by the scientific community. It wasn’t until the 1960s and later that transposons were discovered in bacteriophages, bacteria, and Drosophila. Today, we know that transposons are mobile segments of DNA that can move within the genome of an organism. They can regulate gene expression, protein expression, and virulence (ability to cause disease).

Microbes and Viruses in Genetic Research

Microbiologists have also played a crucial part in our understanding of genetics. Experimental organisms such as Mendel’s garden peas, Morgan’s fruit flies, and McClintock’s corn had already been used successfully to pave the way for an understanding of genetics. However, microbes and viruses were (and still are) excellent model systems for the study of genetics because, unlike peas, fruit flies, and corn, they are propagated more easily in the laboratory, growing to high population densities in a small amount of space and in a short time. In addition, because of their structural simplicity, microbes and viruses are more readily manipulated genetically.

Fortunately, despite significant differences in size, structure, reproduction strategies, and other biological characteristics, there is biochemical unity among all organisms; they have in common the same underlying molecules responsible for heredity and the use of genetic material to give cells their varying characteristics. In the words of French scientist Jacques Monod, “What is true for E. coli is also true for the elephant,” meaning that the biochemistry of life has been maintained throughout evolution and is shared in all forms of life, from simple unicellular organisms to large, complex organisms. This biochemical continuity makes microbes excellent models to use for genetic studies.

In a clever set of experiments in the 1930s and 1940s, German scientist Joachim Hämmerling (1901–1980), using the single-celled alga Acetabularia as a microbial model, established that the genetic information in a eukaryotic cell is housed within the nucleus. Acetabularia spp. are unusually large algal cells that grow asymmetrically, forming a “foot” containing the nucleus, which is used for substrate attachment; a stalk; and an umbrella-like cap—structures that can all be easily seen with the naked eye. In an early set of experiments, Hämmerling removed either the cap or the foot of the cells and observed whether new caps or feet were regenerated, shown below. He found that when the foot of these cells was removed, new feet did not grow; however, when caps were removed from the cells, new caps were regenerated. This suggested that the hereditary information was located in the nucleus-containing foot of each cell.

Two-panel figure. Panel (a) is a photograph of several Acetabularia cells in shallow water, each with a thin stalk topped by a round, disc-shaped cap and a threadlike foot below. Panel (b) is a diagram of one Acetabularia cell labeled cap, stalk, nucleus, and foot; when the cap is removed a new cap regenerates, but when the foot is removed no new foot regenerates.
(a) The cells of the single-celled alga Acetabularia measure 2–6 cm and have a cell morphology that can be observed with the naked eye. Each cell has a cap, a stalk, and a foot, which contains the nucleus. (b) Hämmerling found that if he removed the cap, a new cap would regenerate; but if he removed the foot, a new foot would not regenerate. He concluded that the genetic information needed for regeneration was found in the nucleus. (credit a: modification of work by James St. John)
Extended description

Panel (a) is a photograph of a cluster of Acetabularia cells growing from a rocky, algae-covered surface underwater; each cell has a thin upright stalk and a pale, disc-shaped cap. Panel (b) shows two rows of diagrams. In the top row, a labeled cell (cap, stalk, nucleus, foot) has its cap removed, leaving a bare stalk with a red cut mark at the top; an arrow labeled ’new cap regenerated’ shows the same stalk regrowing a full cap. In the bottom row, the same labeled cell has its foot removed, leaving a red cut mark at the base of the stalk; an arrow labeled ’no new foot regenerated’ shows the stalk with its cap intact but no foot regrowing below.

In another set of experiments, Hämmerling used two species of Acetabularia that have different cap morphologies, A. crenulata and A. mediterranea, shown below. He cut the caps from both types of cells and then grafted the stalk from an A. crenulata onto an A. mediterranea foot, and vice versa. Over time, he observed that the grafted cell with the A. crenulata foot and A. mediterranea stalk developed a cap with the A. crenulata morphology. Conversely, the grafted cell with the A. mediterranea foot and A. crenulata stalk developed a cap with the A. mediterranea morphology. He microscopically confirmed the presence of nuclei in the feet of these cells and attributed the development of these cap morphologies to the nucleus of each grafted cell. Thus, he showed experimentally that the nucleus was the location of genetic material that dictated a cell’s properties.

Diagram of two Acetabularia grafting experiments. Acetabularia mediterranea has a green stalk and a round, disc-shaped cap; Acetabularia crenulata has a blue stalk and a clustered, pompom-shaped cap. In the first graft, a blue upper stalk (from A. crenulata) is joined to a green foot (from A. mediterranea); an arrow shows the resulting plant growing a round, mediterranea-type cap. In the second graft, a green upper stalk (from A. mediterranea) is joined to a blue foot (from A. crenulata); an arrow shows the resulting plant growing a clustered, crenulata-type cap.
In a second set of experiments, Hämmerling used two morphologically different species and grafted stalks from each species to the feet of the other. He found that the properties of the regenerated caps were dictated by the species of the nucleus-containing foot.
Extended description

Two rows. Top row: A. mediterranea is shown at left with a green stalk and a round, disc-shaped cap. Beside it, a graft stalk has a blue upper segment and a green lower segment ending in a foot; an arrow points to the resulting grafted plant, which grows a round, mediterranea-type cap on the same blue-over-green stalk. Bottom row: A. crenulata is shown at left with a blue stalk and a clustered, pompom-shaped cap. Beside it, a graft stalk has a green upper segment and a blue lower segment ending in a foot; an arrow points to the resulting grafted plant, which grows a clustered, crenulata-type cap on the same green-over-blue stalk.

Another microbial model, the red bread mold Neurospora crassa, was used by George Beadle and Edward Tatum to demonstrate the relationship between genes and the proteins they encode. Beadle had worked with fruit flies in Morgan’s laboratory but found them too complex to perform certain types of experiments. N. crassa, on the other hand, is a simpler organism and has the ability to grow on a minimal medium because it contains enzymatic pathways that allow it to use the medium to produce its own vitamins and amino acids.

Beadle and Tatum irradiated the mold with X-rays to induce changes to a sequence of nucleic acids, called mutations. They mated the irradiated mold spores and attempted to grow them on both a complete medium and a minimal medium. They looked for mutants that grew on a complete medium, supplemented with vitamins and amino acids, but did not grow on the minimal medium lacking these supplements. Such molds theoretically contained mutations in the genes that encoded biosynthetic pathways. Upon finding such mutants, they systematically tested each to determine which vitamin or amino acid it was unable to produce, shown below, and published this work in 1941 (G.W. Beadle, E.L. Tatum, “Genetic Control of Biochemical Reactions in Neurospora,” Proceedings of the National Academy of Sciences 27 no. 11 (1941):499–506).

Diagram of the Beadle and Tatum experiment. Red arrows labeled X-rays point from wild-type spores to mutagenized spores; the mutagenized and wild-type spores are crossed, then grown on complete medium (with amino acids) and minimal medium (without amino acids), looking for a mutant that grows on complete but not minimal medium; spores that fail to grow on minimal medium are then tested on minimal medium with a single amino acid added — separate tubes for alanine, threonine, tyrosine, methionine, proline, arginine (circled), lysine, tryptophan, valine, and isoleucine.
Beadle and Tatum’s experiment involved the mating of irradiated and nonirradiated mold spores. These spores were grown on both complete medium and a minimal medium to determine which amino acid or vitamin the mutant was unable to produce on its own.
Extended description

The diagram reads left to right. Wild-type spores (blue ovals) sit beside mutagenized spores (purple ovals) produced when a red arrow labeled X-rays strikes the wild-type spores. Gray arrows show the mutagenized and wild-type spores being crossed, producing purple hybrid spores. From the cross, gray arrows lead to three rows of paired test tubes labeled ‘complete media’ and ‘minimal media’; the top row shows growth (orange contents) in both tubes, the middle and bottom rows show growth only in the complete-medium tube. A caption notes that mutants growing on complete but not minimal medium are sought. A final arrow leads to a row of ten numbered tubes, each labeled with a single amino acid added to minimal medium — alanine, threonine, tyrosine, methionine, proline, arginine, lysine, tryptophan, valine, isoleucine, in that order — with the arginine tube circled in red to mark the one tube that supports growth for the mutant under study.

Subsequent work by Beadle, Tatum, and colleagues showed that they could isolate different classes of mutants that required a particular supplement, like the amino acid arginine, shown below. With some knowledge of the arginine biosynthesis pathway, they identified three classes of arginine mutants by supplementing the minimal medium with intermediates (citrulline or ornithine) in the pathway. The three mutants differed in their abilities to grow in each of the media, which led the group of scientists to propose, in 1945, that each type of mutant had a defect in a different gene in the arginine biosynthesis pathway. This led to the so-called one gene–one enzyme hypothesis, which suggested that each gene encodes one enzyme.

Subsequent knowledge about the processes of transcription and translation led scientists to revise this to the “one gene–one polypeptide” hypothesis. Although there are some genes that do not encode polypeptides (but rather encode for transfer RNAs [tRNAs] or ribosomal RNAs [rRNAs], which we will discuss later), the one gene–one enzyme hypothesis is true in many cases, especially in microbes. Beadle and Tatum’s discovery of the link between genes and corresponding characteristics earned them the 1958 Nobel Prize in Physiology and Medicine and has since become the basis for modern molecular genetics.

A table titled Beadle and Tatum Experiments lists four bread-mold strains — wild type, mutant 1, mutant 2, mutant 3 — against four media: minimal medium (MM), MM plus ornithine, MM plus citrulline, and MM plus arginine, showing which combinations support growth. Below the table, a diagram shows gene 1, gene 2, and gene 3 each producing an enzyme that converts one pathway intermediate to the next — enzyme 1 makes ornithine, enzyme 2 converts ornithine to citrulline, enzyme 3 converts citrulline to arginine — with a separate row for each mutant showing a yellow X over its blocked enzyme.
Three classes of arginine mutants were identified, each differing in their ability to grow in the presence of intermediates in the arginine biosynthesis pathway. From this, Beadle and Tatum concluded that each mutant was defective in a different gene encoding a different enzyme in the arginine biosynthesis pathway, leading to them to their one gene–one enzyme hypothesis.
Extended description

The table’s four columns (MM, MM+ornithine, MM+citrulline, MM+arginine) are marked ‘grew’ (green) or ‘did not grow’ (yellow) for each of four rows: wild type grows in all four columns; mutant 1 does not grow on MM alone but grows on the other three; mutant 2 does not grow on MM or MM+ornithine but grows on the other two; mutant 3 does not grow on MM, MM+ornithine, or MM+citrulline, growing only on MM+arginine. Below the table, the normal pathway is diagrammed as three steps in a row: gene 1 produces enzyme 1, which converts a starting compound to ornithine; gene 2 produces enzyme 2, which converts ornithine to citrulline; gene 3 produces enzyme 3, which converts citrulline to arginine. Three further rows repeat this pathway with a yellow X marking the blocked step: mutant 1’s X is on enzyme 1 (‘mutation in gene 1 that destroyed the function of enzyme 1’); mutant 2’s X is on enzyme 2; mutant 3’s X is on enzyme 3, each caption naming the corresponding gene and enzyme.

Link to Learning

To learn more about the experiments of Beadle and Tatum, visit this website from the DNA Learning Center.

Check Your Understanding

What organism did Morgan and his colleagues use to develop the Chromosomal Theory of Inheritance? What traits did they track?

Show model answer
Morgan and his colleagues used the fruit fly, Drosophila melanogaster, carrying out crosses with it for several years. They performed meticulous microscopic observations of fly chromosomes and correlated these observations with the resulting fly characteristics, providing the first experimental evidence supporting the Chromosomal Theory of Inheritance.

Did your answer mention:

What did Hämmerling prove with his experiments on Acetabularia?

DNA as the Molecule Responsible for Heredity

By the beginning of the 20th century, a great deal of work had already been done on characterizing DNA and establishing the foundations of genetics, including attributing heredity to chromosomes found within the nucleus. Despite all of this research, it was not until well into the 20th century that these lines of research converged and scientists began to consider that DNA could be the genetic material that offspring inherited from their parents. DNA, containing only four different nucleotides, was thought to be structurally too simple to encode such complex genetic information. Instead, protein was thought to have the complexity required to serve as cellular genetic information because it is composed of 20 different amino acids that could be combined in a huge variety of combinations. Microbiologists played a pivotal role in the research that determined that DNA is the molecule responsible for heredity.

Griffith’s Transformation Experiments

British bacteriologist Frederick Griffith (1879–1941) was perhaps the first person to show that hereditary information could be transferred from one cell to another “horizontally” (between members of the same generation), rather than “vertically” (from parent to offspring). In 1928, he reported the first demonstration of bacterial transformation, a process in which external DNA is taken up by a cell, thereby changing its characteristics (F. Griffith, “The Significance of Pneumococcal Types,” Journal of Hygiene 27 no. 2 (1928):113–159). He was working with two strains of Streptococcus pneumoniae, a bacterium that causes pneumonia: a rough (R) strain and a smooth (S) strain. The R strain is nonpathogenic and lacks a capsule on its outer surface; as a result, colonies from the R strain appear rough when grown on plates. The S strain is pathogenic and has a capsule outside its cell wall, allowing it to escape phagocytosis by the host immune system. The capsules cause colonies from the S strain to appear smooth when grown on plates.

In a series of experiments, Griffith analyzed the effects of live R, live S, and heat-killed S strains of S. pneumoniae on live mice, shown below. When mice were injected with the live S strain, the mice died. When he injected the mice with the live R strain or the heat-killed S strain, the mice survived. But when he injected the mice with a mixture of live R strain and heat-killed S strain, the mice died. Upon isolating the live bacteria from the dead mouse, he only recovered the S strain of bacteria. When he then injected this isolated S strain into fresh mice, the mice died. Griffith concluded that something had passed from the heat-killed S strain into the live R strain and “transformed” it into the pathogenic S strain; he called this the “transforming principle.” These experiments are now famously known as Griffith’s transformation experiments.

Diagram of Griffith's four experiments. Control: rough strain (nonvirulent) injected into a mouse; the mouse lives. Experiment 1: heat-killed smooth strain injected; the mouse lives. Experiment 2: rough strain plus heat-killed smooth strain injected; the mouse dies. Experiment 3: smooth strain recovered from the dead mouse in Experiment 2 injected into a fresh mouse; the mouse dies.
In his famous series of experiments, Griffith used two strains of S. pneumoniae. The S strain is pathogenic and causes death. Mice injected with the nonpathogenic R strain or the heat-killed S strain survive. However, a combination of the heat-killed S strain and the live R strain causes the mice to die. The S strain recovered from the dead mouse showed that something had passed from the heat-killed S strain to the R strain, transforming the R strain into an S strain in the process.
Extended description

Four columns, each showing a circle of bacterial cells drawn above a syringe injecting a mouse, with an arrow down to a second mouse showing the outcome. Control: a circle of blue cells labeled rough strain (nonvirulent) is injected; the mouse below is unmarked, indicating it lives. Experiment 1: a circle of orange encapsulated cells labeled heat-killed smooth strain is injected; the mouse lives. Experiment 2: a circle with both blue rough cells and orange heat-killed smooth cells is injected; the mouse below is marked with a red X, indicating it dies. Experiment 3: a circle of orange-red cells labeled smooth strain, described as the virulent strain recovered from the dead mice in Experiment 2, is injected; this mouse is also marked with a red X and dies.

In 1944, Oswald Avery, Colin MacLeod, and Maclyn McCarty were interested in exploring Griffith’s transforming principle further. They isolated the S strain from infected dead mice, heat-killed it, and inactivated various components of the S extract, conducting a systematic elimination study, shown below. They used enzymes that specifically degraded proteins, RNA, and DNA and mixed the S extract with each of these individual enzymes. Then, they tested each extract/enzyme combination’s resulting ability to transform the R strain, as observed by the diffuse growth of the S strain in culture media and confirmed visually by growth on plates. They found that when DNA was degraded, the resulting mixture was no longer able to transform the R strain bacteria, whereas no other enzymatic treatment was able to prevent transformation. This led them to conclude that DNA was the transforming principle. Despite their results, many scientists did not accept their conclusion, instead believing that there were protein contaminants within their extracts.

Diagram titled Determining the Identity of the Hereditary Material. A single tube of heat-killed S strain extract, with green dots for proteins, blue dots for DNA, and red dots for RNA, splits into four tubes treated with no enzyme, proteases, ribonucleases, or deoxyribonucleases; R cells are then added to each, and only the deoxyribonuclease tube fails to yield S cells.
Oswald Avery, Colin MacLeod, and Maclyn McCarty followed up on Griffith’s experiment and experimentally determined that the transforming principle was DNA.
Extended description

A single starting tube, labeled ‘heat is used to kill S strain of S. pneumoniae and capsule components are removed from solution,’ contains green dots (proteins), blue dots (DNA), and red dots (RNA); a key at left defines these three colors. Four arrows lead from this tube to four branches, each ending in a small tube of cells. Branch 1, the control, uses no enzyme, so all three molecule types remain, and adding R cells yields S cells, so transformation occurred. Branch 2 uses proteases, which degrade proteins, leaving RNA and DNA; R cells are added and S cells appear, so transformation occurred without protein. Branch 3 uses ribonucleases, which degrade RNA, leaving proteins and DNA; R cells are added and S cells appear, so transformation occurred without RNA. Branch 4 uses deoxyribonucleases, which degrade DNA, leaving proteins and RNA; R cells are added and no S cells appear, so transformation does not occur without DNA.

Check Your Understanding

How did Avery, MacLeod, and McCarty’s experiments show that DNA was the transforming principle first described by Griffith?

Show model answer
Avery, MacLeod, and McCarty isolated the heat-killed S strain extract and treated separate samples with enzymes that specifically degraded proteins, RNA, or DNA, then tested each treated extract’s ability to transform the R strain. When DNA was degraded, the resulting mixture was no longer able to transform the R strain bacteria, whereas degrading proteins or RNA did not prevent transformation. This led them to conclude that DNA, and not protein or RNA, was the transforming principle Griffith had described.

Did your answer mention:

Hershey and Chase’s Proof of DNA as Genetic Material

Alfred Hershey and Martha Chase performed their own experiments in 1952 and were able to provide confirmatory evidence that DNA, not protein, was the genetic material (A.D. Hershey, M. Chase, “Independent Functions of Viral Protein and Nucleic Acid in Growth of Bacteriophage,” Journal of General Physiology 36 no. 1 (1952):39–56). Hershey and Chase were studying a bacteriophage, a virus that infects bacteria. Viruses typically have a simple structure: a protein coat, called the capsid, and a nucleic acid core that contains the genetic material, either DNA or RNA (see Viruses). The particular bacteriophage they were studying was the T2 bacteriophage, which infects E. coli cells. As we now know today, T2 attaches to the surface of the bacterial cell and then it injects its nucleic acids inside the cell. The phage DNA makes multiple copies of itself using the host machinery, and eventually the host cell bursts, releasing a large number of bacteriophages.

Hershey and Chase labeled the protein coat in one batch of phage using radioactive sulfur, ³⁵S, because sulfur is found in the amino acids methionine and cysteine but not in nucleic acids. They labeled the DNA in another batch using radioactive phosphorus, ³²P, because phosphorus is found in DNA and RNA but not typically in protein.

Each batch of phage was allowed to infect the cells separately. After infection, Hershey and Chase put each phage bacterial suspension in a blender, which detached the phage coats from the host cell, and spun down the resulting suspension in a centrifuge. The heavier bacterial cells settled down and formed a pellet, whereas the lighter phage particles stayed in the supernatant. In the tube with the protein labeled, the radioactivity remained only in the supernatant. In the tube with the DNA labeled, the radioactivity was detected only in the bacterial cells. Hershey and Chase concluded that it was the phage DNA that was injected into the cell that carried the information to produce more phage particles, thus proving that DNA, not proteins, was the source of the genetic material. As a result of their work, the scientific community more broadly accepted DNA as the molecule responsible for heredity.

Diagram of the Hershey–Chase experiment in four numbered steps. Step 1: one batch of phage is labeled with ³²P, incorporated into the DNA; another batch is labeled with ³⁵S, incorporated into the protein coat. Step 2: bacteria are infected with each labeled phage. Step 3: each culture is blended and centrifuged, separating the lighter phage particles from the heavier bacterial cells. Step 4: bacteria infected with ³²P-labeled phage produce ³²P-labeled phage; bacteria infected with ³⁵S-labeled phage produce unlabeled phage.
Martha Chase and Alfred Hershey conducted an experiment separately labeling the DNA and proteins of the T2 bacteriophage to determine which component was the genetic material responsible for the production of new phage particles.
Extended description

Two rows of drawings above four numbered text boxes. The top row shows a blue-outlined phage labeled ³²P-labeled DNA attaching to a bacterial cell and injecting its tail fiber into it, then a tube and centrifuge separating a small blue phage (supernatant) from the bacterial cell, which is shown lysing to release ³²P-labeled phage. The bottom row repeats this with a red-outlined phage labeled ³⁵S-labeled protein coat; after centrifugation and lysis, the released phage are unlabeled. The four numbered boxes below state: (1) one batch of phage was labeled with ³²P, incorporated into the DNA, and another batch with ³⁵S, incorporated into the protein coat; (2) bacteria were infected with the phage, to identify whether viral DNA or viral protein entered the host cell; (3) the cultures were blended and centrifuged to separate the lighter phage particles from the heavier bacterial cells; (4) bacteria infected with ³²P-labeled DNA produced ³²P-labeled phage, while bacteria infected with ³⁵S-labeled phage produced unlabeled phage.

By the time Hershey and Chase published their experiment in the early 1950s, microbiologists and other scientists had been researching heredity for over 80 years. Building on one another’s research during that time culminated in the general agreement that DNA was the genetic material responsible for heredity, shown in the timeline below. This knowledge set the stage for the age of molecular biology to come and the significant advancements in biotechnology and systems biology that we are experiencing today.

Link to Learning

To learn more about the experiments involved in the history of genetics and the discovery of DNA as the genetic material of cells, visit this website from the DNA Learning Center.

Check Your Understanding

How did Hershey and Chase use microbes to prove that DNA is genetic material?

Show model answer
Hershey and Chase used the T2 bacteriophage, a virus that infects E. coli, labeling one batch’s DNA with radioactive phosphorus (³²P) and another batch’s protein coat with radioactive sulfur (³⁵S). After each labeled batch infected bacteria, they used a blender to detach the phage coats from the host cells and a centrifuge to separate the heavier bacterial cells (pellet) from the lighter phage particles (supernatant). The radioactivity from the protein label remained only in the supernatant, while the radioactivity from the DNA label was detected only in the bacterial cells, showing that it was the phage DNA — not the protein — that entered the cell and carried the information to produce more phage particles.

Did your answer mention:

A timeline from 1865 to the 1990s tracking the discovery of DNA as the hereditary molecule, with photographs of several named scientists beside fifteen dated milestones from Mendel's pea-plant crosses through Hershey and Chase's proof and Watson and Crick's double helix to the start of genome sequencing projects.
A timeline of key events leading up to the identification of DNA as the molecule responsible for heredity
Extended description

A horizontal line carries fifteen dated points, alternating labels above and below the line, each with a short description and some with a black-and-white photograph of the scientist(s) named: 1865, Mendel, documents patterns of heredity in pea plants (photo); 1869, Miescher, first identifies DNA (’nuclein’) (photo); 1902, Sutton and Boveri, propose chromosome theory of heredity (photos); 1915, Morgan and his ‘Fly Room’ colleagues confirm the chromosome theory of heredity; 1927, Muller shows that X-rays induce mutation; 1928, Griffith’s ’transformation experiments’ transform nonpathogenic bacterial strains to pathogenic; 1930s, Hämmerling shows that hereditary information is contained in the nuclei of eukaryotic cells; 1931, McClintock demonstrates genetic recombination in corn (photo); 1941, Beadle and Tatum describe the ‘one gene–one enzyme’ hypothesis; 1944, Avery, McLeod, and McCarty show that DNA is the ’transforming principle’ responsible for heredity (photos); 1950, Chargaff discovers that A=T and C=G (Chargaff’s rules); 1952, Hershey and Chase use radioactive labeling to prove that DNA is responsible for heredity; 1953, Watson and Crick propose the double helix structure of DNA; 1961, Jacob and Monod propose the existence of mRNA; 1990s, genome sequencing projects begin.

Summary

  • DNA was discovered and characterized long before its role in heredity was understood. Microbiologists played significant roles in demonstrating that DNA is the hereditary information found within cells.
  • In the 1850s and 1860s, Gregor Mendel experimented with true-breeding garden peas to demonstrate the heritability of specific observable traits.
  • In 1869, Friedrich Miescher isolated and purified a compound rich in phosphorus from the nuclei of white blood cells; he named the compound nuclein. Miescher’s student Richard Altmann discovered its acidic nature, renaming it nucleic acid. Albrecht Kossel characterized the nucleotide bases found within nucleic acids.
  • Although Walter Sutton and Theodor Boveri proposed the Chromosomal Theory of Inheritance in 1902, it was not scientifically demonstrated until the 1915 publication of the work of Thomas Hunt Morgan and his colleagues.
  • Using Acetabularia, a large algal cell, as his model system, Joachim Hämmerling demonstrated in the 1930s and 1940s that the nucleus was the location of hereditary information in these cells.
  • In the 1940s, George Beadle and Edward Tatum used the mold Neurospora crassa to show that each protein’s production was under the control of a single gene, demonstrating the “one gene–one enzyme” hypothesis.
  • In 1928, Frederick Griffith showed that dead encapsulated bacteria could pass genetic information to live nonencapsulated bacteria and transform them into harmful strains. In 1944, Oswald Avery, Colin McLeod, and Maclyn McCarty identified the compound as DNA.
  • The nature of DNA as the molecule that stores genetic information was unequivocally demonstrated in the experiment of Alfred Hershey and Martha Chase published in 1952. Labeled DNA from bacterial viruses entered and infected bacterial cells, giving rise to more viral particles. The labeled protein coats did not participate in the transmission of genetic information.

Practice

Describe the discovery of nucleic acid and nucleotides

The element ________ is unique to nucleic acids compared with other macromolecules.

Miescher’s student Richard Altmann discovered the acidic nature of the compound nuclein and renamed it the ________.

Which scientist isolated and characterized the five different nucleotide bases composing nucleic acid?

Explain the historical experiments that led to the characterization of DNA

Which method did Morgan and colleagues use to show that hereditary information was carried on chromosomes?

In the late 1800s and early 1900s, the macromolecule thought to be responsible for heredity was ______________.

Why was nucleic acid disregarded for so long as the molecule responsible for the transmission of hereditary information?

Show model answer
DNA, containing only four different nucleotides, was thought to be structurally too simple to encode such complex genetic information. Instead, protein was thought to have the complexity required to serve as cellular genetic information, because it is composed of 20 different amino acids that could be combined in a huge variety of combinations.

Did your answer mention:

Describe how microbiology and microorganisms have been used to discover the biochemistry of genes

Why was the alga Acetabularia a good model organism for Joachim Hämmerling to use to identify the location of genetic material?

Why do bacteria and viruses make good model systems for various genetic studies?

Show model answer
Microbes and viruses are propagated more easily in the laboratory than peas, fruit flies, and corn, growing to high population densities in a small amount of space and in a short time. In addition, because of their structural simplicity, microbes and viruses are more readily manipulated genetically.

Did your answer mention:

Diagram of two grafting experiments with Acetabularia mediterranea (round, disc-shaped cap; green stalk and foot) and Acetabularia crenulata (clustered, pompom-shaped cap; blue stalk and foot), shown at left as reference. Graft A combines the foot of A. mediterranea with the upper stalk of A. crenulata. Graft B combines the foot of A. crenulata with the upper stalk of A. mediterranea.
A hypothetical graft experiment with Acetabularia: Graft A joins the foot of A. mediterranea to the upper stalk of A. crenulata, and Graft B joins the foot of A. crenulata to the upper stalk of A. mediterranea.

In the figure shown, if the nuclei were contained within the stalks of Acetabularia rather than the feet, what types of caps would you expect from the pictured grafts?

Show model answer
Hämmerling’s actual experiments showed that a graft’s cap morphology is dictated by the species of its nucleus-containing foot. If the nucleus were instead located in the stalk, cap morphology would be dictated by the species of the stalk piece instead. Graft A combines the foot of A. mediterranea with the upper stalk of A. crenulata; with the nucleus hypothetically in the stalk, Graft A would be expected to develop a clustered, A. crenulata-type cap. Graft B combines the foot of A. crenulata with the upper stalk of A. mediterranea; with the nucleus hypothetically in the stalk, Graft B would be expected to develop a round, A. mediterranea-type cap.

Did your answer mention:

Explain how scientists established the link between DNA and heredity

Frederick Griffith infected mice with a combination of dead R and live S bacterial strains. What was the outcome, and why did it occur?

Which of the following best describes the results from Hershey and Chase’s experiment using bacterial viruses with ³⁵S-labeled proteins or ³²P-labeled DNA that are consistent with protein being the molecule responsible for hereditary?

According to Beadle and Tatum’s “one gene–one enzyme” hypothesis, which of the following enzymes will eliminate the transformation of hereditary material from pathogenic bacteria to nonpathogenic bacteria?

Bacteriophages inject their genetic material into host cells, whereas animal viruses enter host cells completely. Why was it important to use a bacteriophage in the Hershey–Chase experiment rather than an animal virus?

Show model answer
The T2 bacteriophage attaches to the surface of the bacterial cell and injects only its nucleic acids inside the cell, while its protein coat remains outside, attached to the cell surface, where blending can detach it. Because a bacteriophage’s protein and nucleic acid are physically separated by infection in this way, Hershey and Chase could label each component separately and then use a blender and centrifuge to determine which one — the protein that stayed outside or the DNA injected inside — was carried into the bacterial cell and directed the production of new phage particles. An animal virus that enters a host cell completely would carry both its protein and its nucleic acid inside the cell together, so this separation of the two components would not be possible.

Did your answer mention:

Why are Hershey and Chase credited with identifying DNA as the carrier of heredity even though DNA had been discovered many years before?

Show model answer
DNA had been chemically discovered and characterized as early as the 1860s and 1870s, but for decades afterward scientists did not connect it to heredity — DNA’s only four different nucleotides seemed too structurally simple, so protein, with its twenty amino acids, was instead thought to carry genetic information. Hershey and Chase’s 1952 experiment provided direct, confirmatory experimental evidence that it was specifically DNA, not protein, that entered bacterial cells and directed the production of new phage particles. It was this demonstrated proof of DNA’s function as the genetic material — not its earlier chemical discovery — that led the scientific community to more broadly accept DNA as the molecule responsible for heredity.

Did your answer mention:


This section is adapted from Microbiology, Section 10.1: Using Microbiology to Discover the Secrets of Life by Nina Parker, Mark Schneegurt, Anh-Hue Thi Tu, Philip Lister, Brian M. Forster, and OpenStax, © OpenStax, licensed under CC BY-NC-SA 4.0. Access the original for free at openstax.org. Changes: this module defines no class-less <term> elements — its fifty-four <term class="no-emphasis"> elements are index entries, not defined terms — so this page carries no ## Key terms heading, per the life-sciences rule that a defined-term count of zero means no block; all nine figures are re-encoded as WebP and set kind="diagram" after inspection (the footandcap figure mixes one photographic panel with one drawn panel and is a diagram by the composite rule), each alt rewritten from the image rather than the source alt, and each given a longdesc walking its steps, branches, or labels in reading order; three source-alt defects found by inspection are not carried into the page’s alts and are logged in the ledger rather than the errata file (a misspelling of “Hämmerling” and a one-year date discrepancy in the Timeline figure’s alt, and a missing word-boundary typo in the Beadle–Tatum X-ray figure’s alt), none of them printed anywhere in the running prose; the four footnotes (Mendel 1865, Beadle and Tatum 1941, Griffith 1928, Hershey and Chase 1952) are rendered as inline parenthetical citations after the sentences they support, with the Mendel footnote’s “for English translation, see” access URL dropped; isotopes are set as Unicode superscripts (³²P, ³⁵S) and the filial generations as Unicode subscripts (F₁, F₂); the Clinical Focus box is rendered as a callout with its closing question kept as an unanswered plain bullet, and its “Jump to the next Clinical Focus box” link replaced by a sentence naming where the case continues, Structure and Function of DNA (this section opens the case, so no “the case began in” sentence is needed); both Link to Learning boxes keep their source URLs, described by the surrounding sentence; the cross-reference to Viruses is an absolute link to Viruses; same-module figure cross-references are rendered as describing prose (“shown below,” “shown in the timeline below”) rather than numbered references; the four body Check Your Understanding bullets (2 in the Microbes and Viruses subsection, 1 each in the Griffith and Hershey–Chase subsections) are rendered as body items at their note’s position — the Hämmerling-proof bullet is graded as a multiple choice from the module’s own concluding sentence naming the nucleus, and the other three (Morgan’s organism and traits, the Avery–MacLeod–McCarty elimination study, and the Hershey–Chase labeling logic) stay self-checks because their honest answers assemble two or more sentences of the module; of the five source Multiple Choice items, all five are used as printed in Practice, keyed as the source keys them; both Fill in the Blank items are used as printed textins; of the three unkeyed Short Answer questions, all three stay self-checks: why nucleic acid was disregarded needs the DNA-four-nucleotides sentence AND the protein-twenty-amino-acids sentence assembled (two module sentences, not one fixing sentence — reverted from an earlier multiple-choice draft after the checker’s one-sentence read); why bacteria and viruses make good model systems likewise needs the laboratory-propagation sentence AND the structural-simplicity sentence assembled (also reverted from an earlier multiple-choice draft for the same reason); and why a bacteriophage rather than an animal virus stays a self-check because its honest answer requires assembling the phage-infection mechanism with the experiment’s separation logic across two paragraphs; of the two unkeyed Critical Thinking questions, the bare-media item (the Acetabularia stalk-graft hypothetical) is rendered as a mediafigure with an author-written caption immediately followed by a self-check whose model answer inverts Hämmerling’s actual foot-determines-cap finding, and the other (why Hershey and Chase are credited despite DNA’s earlier discovery) stays a self-check assembling the module’s opening historical paragraphs with the Hershey–Chase section’s own conclusion; two author-built select-the-term items (naming Albrecht Kossel from the body’s Miescher–Altmann–Kossel passage, and a cloze from the summary’s Altmann sentence) fill the first objective’s group to the book’s floor, since none of the module’s twelve keyed and unkeyed exercises tests nucleic-acid discovery directly; the module prints this scientist’s name both correctly (“Kossel,” at his first, term-marked occurrence) and misspelled (“Kossell,” later in the same paragraph and again in the Summary) — both misspelled occurrences are corrected in place to “Kossel” with no inline note, per the one-word-typo rule; and the two author-built graded multiple-choice items (naming Kossel, and the Hämmerling body item) key different option positions rather than both defaulting to the first option. No source exercise item is otherwise omitted. One citation correction: the Griffith 1928 Journal of Hygiene page range is printed as 113–159 (the source prints “8–159”).