Protozoan Infections of the Gastrointestinal Tract
By the end of this section, you will be able to:
- Identify the most common protozoans that can cause infections of the GI tract
- Compare the major characteristics of specific protozoan diseases affecting the GI tract
Like other microbes, protozoa are abundant in natural microbiota but can also be associated with significant illness. Gastrointestinal diseases caused by protozoa are generally associated with exposure to contaminated food and water, meaning that those without access to good sanitation are at greatest risk. Even in developed countries, infections can occur and these microbes have sometimes caused significant outbreaks from contamination of public water supplies.
Giardiasis
Also called backpacker’s diarrhea or beaver fever, giardiasis is a common disease in the United States caused by the flagellated protist Giardia lamblia, also known as Giardia intestinalis or Giardia duodenalis (see the Giardia lamblia micrograph in Types of Microorganisms). To establish infection, G. lamblia uses a large adhesive disk to attach to the intestinal mucosa. The disk is comprised of microtubules. During adhesion, the flagella of G. lamblia move in a manner that draws fluid out from under the disk, resulting in an area of lower pressure that promotes its adhesion to the intestinal epithelial cells. Due to its attachment, Giardia also blocks absorption of nutrients, including fats.
Transmission occurs through contaminated food or water or directly from person to person. Children in day-care centers are at risk due to their tendency to put items into their mouths that may be contaminated. Large outbreaks may occur if a public water supply becomes contaminated. Giardia have a resistant cyst stage in their life cycle that is able to survive cold temperatures and the chlorination treatment typically used for drinking water in municipal reservoirs. As a result, municipal water must be filtered to trap and remove these cysts. Once consumed by the host, Giardia develops into the active trophozoite.
Infected individuals may be asymptomatic or have gastrointestinal signs and symptoms, sometimes accompanied by weight loss. Common symptoms, which appear one to three weeks after exposure, include diarrhea, nausea, stomach cramps, gas, greasy stool (because fat absorption is being blocked), and possible dehydration. The parasite remains in the colon and does not cause systemic infection. Signs and symptoms generally clear within two to six weeks. Chronic infections may develop and are often resistant to treatment. These are associated with weight loss, episodic diarrhea, and malabsorption syndrome due to the blocked nutrient absorption.
Diagnosis may be made using observation under the microscope. A stool ova and parasite (O&P) exam involves direct examination of a stool sample for the presence of cysts and trophozoites; it can be used to distinguish common parasitic intestinal infections. ELISA and other immunoassay tests, including commercial direct fluorescence antibody kits, are also used. The most common treatments use metronidazole as the first-line choice, followed by tinidazole. If the infection becomes chronic, the parasites may become resistant to medications.
Cryptosporidiosis
Another protozoan intestinal illness is cryptosporidiosis, which is usually caused by Cryptosporidium parvum or C. hominis (shown below). These pathogens are commonly found in animals and can be spread in feces from mice, birds, and farm animals. Contaminated water and food are most commonly responsible for transmission. The protozoan can also be transmitted through human contact with infected animals or their feces.
In the United States, outbreaks of cryptosporidiosis generally occur through contamination of the public water supply or contaminated water at water parks, swimming pools, and day-care centers. The risk is greatest in areas with poor sanitation, making the disease more common in developing countries.
Signs and symptoms include watery diarrhea, nausea, vomiting, cramps, fever, dehydration, and weight loss. The illness is generally self-limiting within a month. However, immunocompromised patients, such as those with HIV/AIDS, are at particular risk of severe illness or death.
Diagnosis involves direct examination of stool samples, often over multiple days. As with giardiasis, a stool O&P exam may be helpful. Acid fast staining is often used. Enzyme immunoassays and molecular analysis (PCR) are available.
The first line of treatment is typically oral rehydration therapy. Medications are sometimes used to treat the diarrhea. The broad-range anti-parasitic drug nitazoxanide can be used to treat cryptosporidiosis. Other anti-parasitic drugs that can be used include azithromycin and paromomycin.

Amoebiasis (Amebiasis)
The protozoan parasite Entamoeba histolytica causes amoebiasis, which is known as amoebic dysentery in severe cases. E. histolytica is generally transmitted through water or food that has fecal contamination. The disease is most widespread in the developing world and is one of the leading causes of mortality from parasitic disease worldwide. Disease can be caused by as few as 10 cysts being transmitted.
Signs and symptoms range from nonexistent to mild diarrhea to severe amoebic dysentery. Severe infection causes the abdomen to become distended and may be associated with fever. The parasite may live in the colon without causing signs or symptoms or may invade the mucosa to cause colitis. In some cases, the disease spreads to the spleen, brain, genitourinary tract, or lungs. In particular, it may spread to the liver and cause an abscess. When a liver abscess develops, fever, nausea, liver tenderness, weight loss, and pain in the right abdominal quadrant may occur. Chronic infection may occur and is associated with intermittent diarrhea, mucus, pain, flatulence, and weight loss.
Direct examination of fecal specimens may be used for diagnosis. As with cryptosporidiosis, samples are often examined on multiple days. A stool O&P exam of fecal or biopsy specimens may be helpful. Immunoassay, serology, biopsy, molecular, and antibody detection tests are available. Enzyme immunoassay may not distinguish current from past illness. Magnetic resonance imaging (MRI) can be used to detect any liver abscesses. The first line of treatment is metronidazole or tinidazole, followed by diloxanide furoate, iodoquinol, or paromomycin to eliminate the cysts that remain.
Cyclosporiasis
The intestinal disease cyclosporiasis is caused by the protozoan Cyclospora cayetanensis. It is endemic to tropical and subtropical regions and therefore uncommon in the United States, although there have been outbreaks associated with contaminated produce imported from regions where the protozoan is more common.
This protist is transmitted through contaminated food and water and reaches the lining of the small intestine, where it causes infection. Signs and symptoms begin within seven to ten days after ingestion. Based on limited data, it appears to be seasonal in ways that differ regionally and that are poorly understood (Centers for Disease Control and Prevention. “Cyclosporiasis FAQs for Health Professionals,” 2014.).
Some individuals do not develop signs or symptoms. Those who do may exhibit explosive and watery diarrhea, fever, nausea, vomiting, cramps, loss of appetite, fatigue, and bloating. These symptoms may last for months without treatment. Trimethoprim-sulfamethoxazole is the recommended treatment.
Microscopic examination is used for diagnosis. A stool O&P examination may be helpful. The oocysts have a distinctive blue halo when viewed using ultraviolet fluorescence microscopy (shown below).

Check Your Understanding
Which protozoan GI infections are common in the United States?
Show model answer
Did your answer mention:
Disease Profile. Protozoan Gastrointestinal Infections
Protozoan GI infections are generally transmitted through contaminated food or water, triggering diarrhea and vomiting that can lead to dehydration. Rehydration therapy is an important aspect of treatment, but most protozoan GI infections can also be treated with drugs that target protozoans.
| Disease | Pathogen | Signs and Symptoms | Transmission | Diagnostic Tests | Antimicrobial Drugs |
|---|---|---|---|---|---|
| Amoebiasis (amoebic dysentery) | Entamoeba histolytica | From mild diarrhea to severe dysentery and colitis; may cause abscess on the liver | Fecal-oral route; ingestion of cysts from fecally contaminated water, food, or hands | Stool O&P exam, enzyme immunoassay | Metronidazole, tinidazole, diloxanide furoate, iodoquinol, paromomycin |
| Cryptosporidiosis | Cryptosporidium parvum, Cryptosporidium hominis | Watery diarrhea, nausea, vomiting, cramps, fever, dehydration, and weight loss | Contact with feces of infected mice, birds, farm animals; ingestion of contaminated food or water; exposure to contaminated water while swimming or bathing | Stool O&P exam, enzyme immunoassay, PCR | Nitazoxanide, azithromycin, and paromomycin |
| Cyclosporiasis | Cyclospora cayetanensis | Explosive diarrhea, fever, nausea, vomiting, cramps, loss of appetite, fatigue, bloating | Ingestion of contaminated food or water | Stool O&P exam using ultraviolet fluorescence microscopy | Trimethoprim-sulfamethoxazole |
| Giardiasis | Giardia lamblia | Diarrhea, nausea, stomach cramps, gas, greasy stool, dehydration if severe; sometimes malabsorption syndrome | Contact with infected individual or contaminated fomites; ingestion of contaminated food or water | Stool O&P exam; ELISA, direct fluorescence antibody assays | Metronidazole, tinidazole |
Summary
- Giardiasis, cryptosporidiosis, amoebiasis, and cyclosporiasis are intestinal infections caused by protozoans.
- Protozoan intestinal infections are commonly transmitted through contaminated food and water.
- Treatment varies depending on the causative agent, so proper diagnosis is important.
- Microscopic examination of stool or biopsy specimens is often used in diagnosis, in combination with other approaches.
Key terms
- giardiasis — intestinal infection caused by Giardia lamblia.
- cryptosporidiosis — intestinal infection caused by Cryptosporidium parvum or C. hominis.
- amoebiasis — intestinal infection caused by Entamoeba histolytica.
- amoebic dysentery — severe form of intestinal infection caused by Entamoeba histolytica, characterized by severe diarrhea with blood and mucus.
- cyclosporiasis — intestinal infection caused by Cyclospora cayetanensis.
Practice
Identify the most common protozoans that can cause infections of the GI tract
Which protozoan is associated with the ability to cause severe dysentery?
This protozoan causes a severe form of the disease that shares its own name with the symptom itself.Which protozoan has a unique appearance, with a blue halo, when viewed using ultraviolet fluorescence microscopy?
Its oocysts are autofluorescent under UV light, shown in this section’s second figure.
The micrograph shows protozoans attached to the intestinal wall of a gerbil. Based on what you know about protozoan intestinal parasites, what is it?
One of these four protozoans uses a large adhesive disk to attach to the intestinal mucosa — exactly what the stem describes as ‘attached to the intestinal wall.’Chronic ________ infections cause the unique sign of disease of greasy stool and are often resistant to treatment.
This protozoan blocks fat absorption where it attaches to the intestinal wall, which is why chronic infection produces greasy stool.Compare the major characteristics of specific protozoan diseases affecting the GI tract
What is an O&P exam?
This test’s name abbreviates the two things a stool sample is examined for directly under the microscope.A severe form of intestinal infection caused by Entamoeba histolytica, characterized by severe diarrhea with blood and mucus, is called ________.
This is the severe form of the disease caused by Entamoeba histolytica, when it produces bloody, mucus-laden diarrhea rather than mild symptoms.Intestinal infection caused by Cryptosporidium parvum or C. hominis is called ________.
This disease’s name combines the genus name of its causative protozoan with the general suffix for a protozoan-caused intestinal illness.Which of these protozoan gastrointestinal infections is diagnosed in part using acid-fast staining?
This protozoan’s diagnosis paragraph, the second subsection in this section, also mentions PCR and enzyme immunoassays alongside this stain.Which of these protozoan gastrointestinal infections has trimethoprim-sulfamethoxazole as its recommended treatment?
This is the same protozoan discussed earlier in this section for its distinctive fluorescent appearance under ultraviolet light.This section is adapted from Microbiology, Section 24.5: Protozoan Infections of the Gastrointestinal Tract by Nina Parker, Mark Schneegurt, Anh-Hue Thi Tu, Philip Lister, Brian M. Forster, and OpenStax, © OpenStax, licensed under CC BY-NC-SA 4.0. Access the original for free at openstax.org. Changes: the module’s two figures (Cryptospor, Cyclospor) are re-encoded as WebP and rendered as mediafigures with kind="photo" after image inspection; their alts are rewritten from the rendered images (naming the clustered circles and scale bar, and the pointer line and label) rather than reused verbatim from the source’s terser alt text; Cryptospor carries eager="true" as the page’s first figure; the module’s internal cross-reference to a Giardia lamblia micrograph in another chapter’s module is rendered as an absolute site-root link to that figure’s section page (already authored); the module’s one footnote citation is rendered as an inline parenthetical citation after the sentence it supports, with its bare access URL and its “Updated June 13” access/revision date dropped, keeping only the publication year; the Giardiasis subsection’s one-word source typo “tropozoite” is corrected to “trophozoite”; the source’s own Multiple Choice option spelling “Cyclospora cayetanesis” (missing the “n”), printed identically in all three of this section’s Multiple Choice option lists even though the module’s own body text and Disease Profile table spell it correctly as “cayetanensis,” is corrected to “cayetanensis” in all four places it appears (three option lists plus one answer parameter) — a one-word source typo, corrected without an inline note, as chapter 21.2 did for its own distractor typo; the Disease Profile summary table (OSC_Microbio_24_05_GIProtoTBL) is transcribed as a Markdown table from the source alt, checked against the printed PDF page (no divergence found), rather than vendored, per this book’s Disease Profile rule; the table’s own alt text prints the cyclosporiasis antimicrobial drug as “Trimethoprim-sulfmethoxazole,” missing the “a” that the section’s own body text two paragraphs earlier includes (“Trimethoprim-sulfamethoxazole”), and the table is transcribed with the body’s correct spelling — a one-word source typo; the two source-keyed Multiple Choice items and the source-keyed Fill in the Blank item are adapted into Practice unchanged with their source keys; the section’s third Multiple Choice item, an Art Connection exercise, prints no <solution> upstream — its figure is rendered as a mediafigure with an author-written caption (the source prints none but a credit line) followed by the item, keyed Giardia lamblia by this author from the module’s adhesive-disk/attachment sentence; the section’s one unkeyed Short Answer question, “What is an O&P exam?,” is graded as a multiplechoice keyed to the module’s own O&P definition sentence, with distractors drawn from the module’s other diagnostic-test sentences, since the source prints no key for it; the section’s one body Check Your Understanding bullet remains a self-check, since no single sentence of the module fixes which infections are common in the United States — the model answer draws on all four subsections’ own prevalence sentences; two Practice items under the second objective (the acid-fast-staining and trimethoprim-sulfamethoxazole comparison questions) are author-written multiple-choice items built strictly from the module’s own diagnosis and treatment sentences to fill that objective’s group; two term-recall textin items are built from the Key terms block; no source exercise, table, or Check Your Understanding bullet is omitted.